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title: "Notes on domain-specific ChatGPT" description: "" added: "Mar 25 2023" tags: [AI]

updatedDate: "July 29 2024"

What are Vector Embeddings?

Vector embeddings are central to many NLP, recommendation, and search algorithms. Sometimes we have a dataset with columns of numeric values or values that can be translated into them. Other times we come across something more abstract like an entire document of text. We create vector embeddings, which are just lists of numbers, for data like this to perform various operations with them. A whole paragraph of text or any other object can be reduced to a vector.

There is something special about vectors that makes them so useful. This representation makes it possible to translate semantic similarity as perceived by humans to proximity in a vector space. In other words, when we represent real-world objects and concepts such as images, audio recordings, news articles, and user profiles as vector embeddings, the semantic similarity of these objects and concepts can be quantified by how close they are to each other as points in vector spaces.

<img alt="sentence_embeddings" src="https://raw.gitmirror.com/kexiZeroing/blog-images/main/008vOhrAly1hcc5elwuuoj313s0e075k.jpg" width="550" />

We train models to translate objects to vectors. A deep neural network is a common tool for training such models. The resulting embeddings are usually high dimensional (up to two thousand dimensions) and dense (all values are non-zero). For text data, models such as Word2Vec, GloVe (Global Vectors for Word Representation), and BERT transform words, sentences, or paragraphs into vector embeddings. Images can be embedded using models such as convolutional neural networks (CNNs).

Tokens and Embeddings

Tokens are the basic units of data processed by LLMs. In the context of text, a token can be a word, part of a word (subword), or even a character — depending on the tokenization process.

In the context of GPT, each piece of text is represented by the ID of the corresponding token in the final vocabulary. If a word is not in the vocabulary, it’s broken down into smaller tokens that are in the vocabulary. The key point is that the assignment of token IDs is not arbitrary but based on the frequency of occurrence and combination patterns in the language data the model was trained on.

# Tokens are vectors based on a specific tokenizer.
# Online playground for OpenAPI tokenizers: https://tiktokenizer.vercel.app

import tiktoken

tokenizer=tiktoken.encoding_for_model("gpt-4")

text = "Apple is a fruit"

token=tokenizer.encode(text)
print(token)
# [27665, 374, 264, 14098]

decoded_text = tokenizer.decode(token)
print(decoded_text)
# Apple is a fruit

Language models don't see text like you and I, instead they see a sequence of tokens. Byte pair encoding (BPE) is a way of converting text into tokens used in GPT.

Token IDs are a straightforward numerical representation of tokens. It is a basic form of vectorization. They do not capture any deeper relationships or patterns between the tokens.

Embeddings are advanced vector representations of tokens. They try to capture the most nuance, connections, and semantic meanings between tokens. Each embedding is generally a series of real numbers on a vector space computed by a neural network. They are the “real inputs” of LLMs.

Embeddings are, in fact, a subset of the model’s weights. They are the weights associated with the input layer (in the case of feedforward networks) or the embedding layer (in models like Transformers).

from langchain_openai.embeddings import OpenAIEmbeddings

embeddings = OpenAIEmbeddings()
embedded_query = embeddings.embed_query("Who is Mary's sister?")

print(f"Embedding length: {len(embedded_query)}") # Embedding length: 1536
print(embedded_query) # [-0.0013594045786472937, -0.03437049808954925, ...]
import { embed } from 'ai'
import { openai } from '@ai-sdk/openai'

const { embedding } = await embed({
  model: openai.embedding('text-embedding-3-small'),
  value: 'sunny day at the beach',
})
const { Configuration, OpenAIApi } = require("openai")
const configuration = new Configuration({
  apiKey: process.env.OPENAI_API_KEY,
})

const openai = new OpenAIApi(configuration)
const response = await openai.createEmbedding({
  model: "text-embedding-ada-002",
  input: "The food was delicious and the waiter...",
})

In data analysis, cosine similarity is a measure of similarity between two non-zero vectors defined in an inner product space. Cosine similarity is the cosine of the angle between the vectors; that is, it is the dot product of the vectors divided by the product of their lengths.

Storing embeddings in Postgres with pgvector

How can I retrieve K nearest embedding vectors quickly? For searching over many vectors quickly, we recommend using a vector database.

pgvector is an open-source vector similarity search for Postgres. Once we have generated embeddings on multiple texts, it is trivial to calculate how similar they are using vector math operations like cosine distance. A perfect use case for this is search. Your process might look something like this:

  1. Pre-process your knowledge base and generate embeddings for each page.
  2. Store your embeddings.
  3. Build a search page that prompts your user for input.
  4. Take user's input, generate a one-time embedding, then perform a similarity search against your pre-processed embeddings.
  5. Return the most similar pages to the user.

pgvector introduces a new data type called vector. We create a column named embedding with the vector data type. The size of the vector defines how many dimensions the vector holds. OpenAI's text-embedding-ada-002 model outputs 1536 dimensions, so we will use that for our vector size. We also create a text column named content to store the original document text that produced this embedding. Depending on your use case, you might just store a reference (URL or foreign key) to a document here instead.

create table documents (
  id bigserial primary key,
  content text,
  embedding vector (1536)
);

ChatGPT doesn't just return existing documents. It's able to assimilate a variety of information into a single, cohesive answer. To do this, we need to provide GPT with some relevant documents, and a prompt that it can use to formulate this answer.

One of the biggest challenges of OpenAI's text-davinci-003 completion model is the 4000 token limit. This makes it challenging if you wanted to prompt GPT-3 to answer questions about your own custom knowledge base that would never fit in a single prompt. Embeddings can help solve this by splitting your prompts into a two-phased process:

  1. Query your embedding database for the most relevant documents related to the question.
  2. Inject these documents as context for GPT-3 to reference in its answer.
// https://supabase.com/blog/openai-embeddings-postgres-vector

// Generate a one-time embedding for the query itself
const embeddingResponse = await openai.createEmbedding({
  model: 'text-embedding-ada-002',
  input,
})

const [{ embedding }] = embeddingResponse.data.data

// Fetching whole documents for this simple example.
// `match_documents` is a function to perform similarity search over embeddings
const { data: documents } = await supabaseClient.rpc('match_documents', {
  query_embedding: embedding,
  match_threshold: 0.78, // Choose an appropriate threshold for your data
  match_count: 10, // Choose the number of matches
})

// https://platform.openai.com/tokenizer
const tokenizer = new GPT3Tokenizer({ type: 'gpt3' })
let tokenCount = 0
let contextText = ''

// Concat matched documents
for (let i = 0; i < documents.length; i++) {
  const document = documents[i]
  const content = document.content
  const encoded = tokenizer.encode(content)
  tokenCount += encoded.text.length

  // Limit context to max 1500 tokens (configurable)
  if (tokenCount > 1500) {
    break
  }

  contextText += `${content.trim()}\n---\n`
}

const prompt = stripIndent`${oneLine`
  You are a very enthusiastic Supabase representative who loves
  to help people! Given the following sections from the Supabase
  documentation, answer the question using only that information,
  outputted in markdown format. If you are unsure and the answer
  is not explicitly written in the documentation, say
  "Sorry, I don't know how to help with that."`}

  Context sections:
  ${contextText}

  Question: """
  ${query}
  """

  Answer as markdown (including related code snippets if available):
`

const completionResponse = await openai.createCompletion({
  model: 'text-davinci-003',
  prompt,
  max_tokens: 512, // Choose the max allowed tokens in completion
  temperature: 0, // Set to 0 for deterministic results
})

Domain-specific ChatGTP Starter App

This starter app uses embeddings to generate a vector representation of a document, and then uses vector search to find the most similar documents to the query. The results of the vector search are then used to construct a prompt for GPT-3, which is then used to generate a response. The response is then streamed to the user.

Creating and storing the embeddings: See pages/embeddings.tsx and pages/api/generate-embeddings.ts

Responding to queries: See pages/api/docs.ts and utils/OpenAIStream.ts

// generate and store embeddings from a list of input URLs
const { method, body } = req;
const { urls } = body;
const documents = await getDocuments(urls);

for (const { url, body } of documents) {
  const input = body.replace(/\n/g, " ");

  const embeddingResponse = await openAi.createEmbedding({
    model: "text-embedding-ada-002",
    input
  });

  const [{ embedding }] = embeddingResponse.data.data;

  await supabaseClient.from("documents").insert({
    content: input,
    embedding,
    url
  });
}

const docSize: number = 1000;  // embedding doc sizes

async function getDocuments(urls: string[]) {
  const documents = [];
  for (const url of urls) {
    const response = await fetch(url);
    const html = await response.text();
    const $ = cheerio.load(html);
    const articleText = $("body").text();

    let start = 0;
    while (start < articleText.length) {
      const end = start + docSize;
      const chunk = articleText.slice(start, end);
      documents.push({ url, body: chunk });
      start = end;
    }
  }
  return documents;
}

GPT and LangChain Chatbot for PDF docs

gpt4-pdf-chatbot-langchain uses LangChain and Pinecone to build a chatbot for large PDF docs. Convert your PDF to embeddings:

<img alt="pdf-to-embeddings" src="https://raw.gitmirror.com/kexiZeroing/blog-images/main/008vOhrAly1hccg4ncf7vj32140fu0x9.jpg" width="800" />

// https://github.com/mayooear/gpt4-pdf-chatbot-langchain/blob/main/scripts/ingest-data.ts

/* load raw docs from the pdf file in the directory */
// https://js.langchain.com/docs/modules/indexes/document_loaders/examples/file_loaders/pdf
const loader = new PDFLoader(filePath);
const rawDocs = await loader.load();

/* split text into chunks */
// https://js.langchain.com/docs/modules/indexes/text_splitters/examples/recursive_character
const textSplitter = new RecursiveCharacterTextSplitter({
  chunkSize: 1000,
  chunkOverlap: 200,
});
const docs = await textSplitter.splitDocuments(rawDocs);

/* create and store the embeddings in the vectorStore */
// https://js.langchain.com/docs/modules/models/embeddings/integrations
const embeddings = new OpenAIEmbeddings();

// https://github.com/hwchase17/langchainjs/pull/112
const pinecone = new PineconeClient();
await pinecone.init({
  environment: process.env.PINECONE_ENVIRONMENT,
  apiKey: process.env.PINECONE_API_KEY,
});
// An index is the highest-level organizational unit of vector data in Pinecone. 
// It accepts and stores vectors, serves queries over the vectors it contains, 
// and does other vector operations over its contents.
const index = pinecone.Index(PINECONE_INDEX_NAME); // change to your own index name

/* embed the PDF documents */
const chunkSize = 50;
for (let i = 0; i < docs.length; i += chunkSize) {
  const chunk = docs.slice(i, i + chunkSize);
  await PineconeStore.fromDocuments(
    index,
    chunk,
    embeddings,
  );
}

An AI of Dan Abramov using RAG (Retrieval Augmented Generation)

https://github.com/TejasQ/danGPT

  1. Turn the query into a vector using the same embeddings model.
  2. Search the vector database for the most similar vectors to the query vector, or vectors "near" the query vector in dimensional space.
  3. Retrieve many original texts from the most similar vectors.
  4. Take those original texts and feed them as context into a generative AI model,such as OpenAI's gpt-3.5-turbo.
  5. The generative AI model then generates a response based on the context it was given, prentending to be Dan.
export const text2vec = async (texts: string[]) => {
  const openai = new OpenAI({ apiKey: process.env.OPENAI_API_KEY });

  const embedding = await openai.embeddings.create({
    model: "text-embedding-3-small",
    dimensions: 1024,
    input: texts,
  });

  return embedding.data.map((d) => d.embedding);
};

export const search = async (query: string) => {
  const astraClient = new AstraDB(
    process.env.ASTRA_DB_APPLICATION_TOKEN,
    process.env.ASTRA_DB_API_ENDPOINT
  );
  const collection = await astraClient.collection('danGPT');
  const [$vector] = await text2vec([query]);
  const results = (
    await collection
      .find({}, { sort: { $vector }, limit: 100, includeSimilarity: true })
      .toArray()
  ).filter((r) => r.$similarity > 0.7);

  return results;
};

Vector Database

<img alt="vectorstore" src="https://raw.gitmirror.com/kexiZeroing/blog-images/main/008vOhrAly1hd08amw1npj30u00z9djx.jpg" width="700">

Several algorithms can facilitate the creation of a vector index. Their goal is to enable fast querying by creating a data structure that can be traversed quickly. They will commonly transform the representation of the original vector into a compressed form to optimize the query process.

HNSW (Hierarchical Navigable Small World) creates a hierarchical, tree-like structure where each node of the tree represents a set of vectors. The edges between the nodes represent the similarity between the vectors. The algorithm starts by creating a set of nodes, each with a small number of vectors. The algorithm then examines the vectors of each node and draws an edge between that node and the nodes that have the most similar vectors to the one it has. When we query an HNSW index, it uses this graph to navigate through the tree, visiting the nodes that are most likely to contain the closest vectors to the query vector.

Techniques beyond basic RAG

There is more to RAG than putting documents into a vector DB and adding an LLM on top. That can work, but it won’t always. The retrieval may return relevant information below our top_k cutoff. The metric we would measure here is recall, which measures how many relevant documents are retrieved out of the total number of relevant documents in the dataset. LLM recall degrades as we put more tokens in the context window.

A reranking model — also known as a cross-encoder — is a type of model that, given a query and document pair, will output a similarity score. We use this score to reorder the documents by relevance to our query. Search engineers have used rerankers in two-stage retrieval systems for a long time. In these two-stage systems, a first-stage model (an embedding model / bi-encoder) retrieves a set of relevant documents from a larger dataset. Then, a second-stage model (the reranker) is used to rerank those documents retrieved by the first-stage model. Note that rerankers are slow, and retrievers are fast.

  1. bi-encoders must compress all of the possible meanings of a document into a single vector — meaning we lose information. Additionally, bi-encoders have no context on the query because we don’t know the query until we receive it (we create embeddings before user query time).
  2. A cross-encoder is a type of neural network architecture used in NLP tasks, particularly in the context of sentence or text pair classification. Its purpose is to evaluate and provide a single score for a pair of input sentences, indicating the relationship or similarity between them. Cross-encoders are more accurate than bi-encoders but they don’t scale well, so using them to re-order a shortened list returned by semantic search is the ideal use case.
# https://www.sbert.net/docs/cross_encoder/pretrained_models.html
from sentence_transformers import CrossEncoder
import torch

model = CrossEncoder("cross-encoder/ms-marco-MiniLM-L-6-v2", default_activation_function=torch.nn.Sigmoid())
scores = model.predict([
    ("How many people live in Berlin?", "Berlin had a population of 3,520,031 registered inhabitants in an area of 891.82 square kilometers."),
    ("How many people live in Berlin?", "Berlin is well known for its museums."),
])
# => array([0.9998173 , 0.01312432], dtype=float32)

Rerank APIs

Query Transformation

multi_query_prompt = ChatPromptTemplate.from_template(
  """
  You are an intelligent assistant. Your task is to generate 5 questions based on the provided question in different wording and different perspectives to retrieve relevant documents from a vector database. By generating multiple perspectives on the user question, your goal is to help the user overcome some of the limitations of the distance-based similarity search. Provide these alternative questions separated by newlines. Original question: {question}
  """
)

decompostion_prompt = ChatPromptTemplate.from_template(
  """
  You are a helpful assistant that can break down complex questions into simpler parts. \n
  Your goal is to decompose the given question into multiple sub-questions that can be answerd in isolation to answer the main question in the end. \n
  Provide these sub-questions separated by the newline character. \n
  Original question: {question}\n
  Output (3 queries): 
  """
)